Runs the population model with stressors and stressor-response relationships
Usage
PopulationModel_Run(
dose = NA,
sr_wb_dat = NA,
life_cycle_params = NA,
HUC_ID = NA,
n_years = 100,
MC_sims = 10,
stressors = NA,
output_type = "full",
habitat_dd_k = NULL
)Arguments
- dose
dataframe. Stressor magnitude dataset imported from StressorMagnitudeWorkbook().
- sr_wb_dat
list object. Stressor response workbook imported from StressorResponseWorkbook().
- life_cycle_params
dataframe. Life cycle parameters.
- HUC_ID
character. HUC_ID for the location unit. Can only be one HUC_ID (not an array).
- n_years
numeric. Number of years to run the population.
- MC_sims
numeric. set number of Monte Carlo simulations for the Population Model.
- stressors
(optional) character vector of stressor names to include in the Population Model. Leave the default value as NA if you wish to include all stressors applicable to the population model.
- output_type
(optional) character. Set to "full" for all data of "adults" for only adult data.
- habitat_dd_k
(optional) dataframe of location and stage-specific habitat capacity k values for the target species. If used this dataframe will override the capacity estimates
Value
List object of population model outputs. These include the population vectors for each Monte Carlo simulation and year. List objects names include "ce" for the runs with stressors and "baseline" for the runs without stressors.
Details
Runs the population model within
the Joe Model stress-response framework. The population model is
run independently for each single sub-watershed unit (HUC_ID). Inputs for
PopulationModel_Run include the stressor-response and stressor magnitude
workbooks as well as the life cycle parameters object.