Population Model Run — PopulationModel

Runs the population model

Usage

PopulationModel_Run(
  dose = NA,
  sr_wb_dat = NA,
  life_cycle_params = NA,
  HUC_ID = NA,
  n_years = 100,
  MC_sims = 10,
  stressors = NA,
  output_type = "full",
  habitat_dd_k = NULL
)

Arguments

dose: dataframe. Stressor magnitude dataset imported from StressorMagnitudeWorkbook().
sr_wb_dat: list object. Stressor response workbook imported from StressorResponseWorkbook().
life_cycle_params: dataframe. Life cycle parameters.
HUC_ID: character. HUC_ID for the subwatershed unit.
n_years: numeric. Number of years to run the population.
MC_sims: numeric. set number of Monte Carlo simulations for the Population Model.
stressors: (optional) character vector of stressor names to include in the Population Model. Leave the default value as NA if you wish to include all stressors applicable to the population model.
output_type: (optional) character. Set to "full" for all data of "adults" for only adult data.
habitat_dd_k: (optional) dataframe of location and stage-specific habitat capacity k values for the target species. If used this dataframe will override the capacity estimates

Details

Runs the integrated population model within the Joe Model stress-response framework. The population model is run for a single subwatershed unit (HUC_ID). Inputs for the PopulationModel_Run include the stressor-response and stressor magnitude workbooks as well as the life cycle parameters table.

Examples

if (FALSE) {
library(CEMPRA)
}